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Model
Model ID
iIN800 
Name
S. cerevisiae genome-scale model 
Model Version
1.1 
Parent Model
 
Public
Organism
Saccharomyces cerevisiae 
SBML File
Image Map
Additional Files
 
Taxonomy
4932 
Genome Sequence
 
Biomass Composition
 
Parameter Estimation
 
Regulatory Constraints
 
Growth Conditions
 
License
CC Attribution-Share Alike 3.0 Unported Licence 
Creator Stephan Pabinger
Institute Section for Bioinformatics
Comment

This is a reconstruction of the biochemical network of the yeast Saccharomyces cerevisiae.

Technical notes:

  • The compartments included here have no volume defined; there are no reliable estimates available for those volumes yet.
  • There are no kinetic functions defined for the reactions because this model only represents the chemical structure of the network (stoichiometry).
  • Reactions for uptake and excretion are defined for some of the metabolites. All uptake reactions are constrained to zero flux and all excretion reactions are unconstrained.
  • All genes are assigned to the cytosol. This has no physiological meaning, but it is necessary for the structure of the model.
  • Biomass equations are available for carbon-limited and nitrogen-limited growth. The nitrogen-limited biomass equation is constrained to zero flux.
  • A few reactions are meant to be used to simulate the effect of for example increased ATP production. They are constrained to zero flux.

This SBML representation of the yeast metabolic network is made available under the Creative Commons Attribution-Share Alike 3.0 Unported Licence (see www.creativecommons.org).

 
Accepted
Change Comment
 
Date
Jan 9, 2014 8:09:04 PM 
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