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News
2013-11-21 - Version 2.3.0
  • Improved Recon 1 model
  • Converted the user manual from pdf to html - see the help page
  • Replaced CiteXPlore with EuropePMC
  • Improved menu structure
  • Added more SBML download links
  • Improved comparison functionality
  • Submodel is now called derived model
  • Minor changes to the interface
2013-09-01 - Version 2.2.0
  • New models:
    - human Recon2
    - yeast 7
    - E. coli
    - P. chrysogenum
    - ...
  • Improved interface
  • MEMOSys as Virtual Machine Image
2013-06-06 - Version 2.1.0
  • Use of JSBML (native Java library for SBML)
  • Derived Model creation is started in the background
  • New search terms in ReactionList
  • Improved interface
  • Easy access system:
    - Jump directly to a reaction: http://<host>/MEMOSys/restReaction/<reactionid> (e.g.: reactionid = 1234)
    - Use KEGG to jump directly to a reaction: http://<host>/MEMOSys/restKegg/<modelId>/<keggid> (e.g.: modelId = human_recon1, keggid = asdf)
2012-06-10 - Version 2.0
  • New layout
  • Improved SBML parser
  • New models included
2012-01-16 - Version 1.5.1
  • Database - bugfixes
2011-11-18 - Version 1.5
  • MEMOSys allows now creation of derived models
  • Difference messaging improved
  • SBML Import not showing correct progress bar
  • Improved interface for Model list
  • Updated user guide
  • Bugfixes
2011-09-12 - Version 1.0
  • Balanced information displayed in reaction list
  • Overview information after SBML import
  • Export mechanism respects all selected fields
  • Additional annotations can be added to model and reaction
  • Improved user interface
2011-09-12 - Publication
  • The paper MEMOSys: Bioinformatics platform for genome-scale metabolic models (Pabinger et. al.) was accepted for publication in the journal BMC Systems Biology. PMID: 21276275
2010-11-24 - Version 0.5.0
  • SBML export
    All exported models are now valid SBML files
  • Improved speed of comparison mechanism
  • Model selection is directly saved when ticking the checkbox next to the model
  • Menu has been restructured
2010-08-05 - Version 0.3.6
  • New function to improve annotation of metabolites and genes
    Available for editors in SBML section
    Based on sbml files
    Please consult the user guide for more information
  • Quicksearch fetches reactions of metabolites on demand -> performance improvement
2010-07-22 - Version 0.3.5
  • Models are now assigned to groups/users -> rights granted according to usermanagement
  • Quicksearch functionality updated
  • SBML parser updated
2010-06-23 - Version 0.3.0
  • Moved memosys to new location - http://memosys.i-med.ac.at
  • Fixed bugs to use PostgreSQL as backend
  • Quicksearch now includes organism and enzyme name
  • UniProt information can be displayed in gene view
2010-04-28 - Version 0.2.8
  • Performance improvements
    Improved performance in reaction list and metabolite autocomplete box
2010-03-30 - Version 0.2.7
  • Comparison
    Fixed session problem
  • Image maps
    Added several image maps to models
2010-01-12 - Version 0.2.5
  • Export
    Added export to COBRA file format
  • PDF, Excel
    Reactions and metabolites can be exported to Excel or PDF
2009-12-15 - Version 0.2.2
  • Quicksearch
    Search field beneath the navigation menu
    Searches for reactions, genes, metabolites
  • Comparison of models
    Allows to compare 2 models
    Output displays reactions, metabolites, genes of model1, model2, and model1+model2
    Displays Venn diagrams
2009-11-12 - Version 0.2
  • Selection of models
    Users can now select the model for which the reactions are shown
  • Genes
    Genes are now included into the system
    If the uniprot id is set then the sequence can be directly downloaded
  • Export of SBML
    Export a list of reactions or the complete model (see user guide)
  • Webboard
    Threads can be linked to entities
  • Reactions
    Balance check when editing/creating a reaction
    Correct version of reaction is loaded
  • Miriam links
    are now converted into links
2009-09-18 - Version 0.0.1
First version of MEMOSys is online.